PRED-LIPO supplementary material

This page contains sequences with predicted lipoprotein signal peptides from published complete genomes

We have focused on the following prediction methods:

DOLOP consensus pattern [ Pubmed reference ]

G+LPP consensus pattern [ Pubmed reference ]

von Heijne consensus pattern [ Pubmed reference ]

Prosite rule PS51257

Prosite rule PS00013

LipoP [ Pubmed reference ]

	Sequences with predicted lipoprotein signal peptide
Organism name	Total sequences	DOLOP consensus pattern	G+LPP consensus pattern	von Heijne consensus pattern	PS51257 pattern	PS00013 pattern	LipoP	PRED-LIPO
Acidothermus_cellulolyticus_11B	2157	31	31	71	45	45	34	27
Alkaliphilus_metalliredigens_QYMF	4625	114	111	94	160	155	48	145
Arthrobacter_aurescens_TC1	4041	75	79	120	101	98	85	76
Arthrobacter_FB24	4146	81	86	145	106	106	94	83
Aster_yellows_witches-broom_phytoplasma_AYWB	671	4	0	2	2	2	3	0
Bacillus_amyloliquefaciens_FZB42	3693	64	58	82	89	77	87	67
Bacillus_anthracis_Ames	5311	115	122	114	158	150	150	138
Bacillus_anthracis_Ames_0581	5309	115	122	114	158	150	150	138
Bacillus_anthracis_str_Sterne	5287	117	127	119	167	159	154	140
Bacillus_cereus_ATCC14579	5234	113	127	125	160	153	158	139
Bacillus_cereus_ATCC_10987	5603	121	124	129	159	151	155	139
Bacillus_cereus_cytotoxis_NVH_391-98	3833	68	80	77	114	107	104	95
Bacillus_cereus_E33L	5134	119	136	132	175	168	162	146
Bacillus_clausii_KSM-K16	4096	114	107	144	159	142	152	141
Bacillus_halodurans	4066	110	106	99	137	122	136	123
Bacillus_licheniformis_ATCC_14580	4152	75	77	104	108	103	100	85
Bacillus_licheniformis_DSM_13	4196	74	76	106	107	100	103	87
Bacillus_pumilus_SAFR-032	3681	66	68	105	90	82	88	79
Bacillus_subtilis	4105	71	71	103	101	88	103	88
Bacillus_thuringiensis_Al_Hakam	4736	102	111	121	143	138	143	123
Bacillus_thuringiensis_konkukian	5117	126	139	130	175	166	165	152
Bacillus_weihenstephanensis_KBAB4	5155	129	140	140	178	169	0	155
Bifidobacterium_adolescentis_ATCC_15703	1631	20	24	44	36	34	24	30
Bifidobacterium_longum	1727	29	30	49	39	38	32	33
Caldicellulosiruptor_saccharolyticus_DSM_8903	2679	20	18	24	36	33	27	19
Carboxydothermus_hydrogenoformans_Z-2901	2620	21	21	32	33	32	7	27
Clavibacter_michiganensis_NCPPB_382	2984	73	75	101	87	84	71	66
Clostridium_acetobutylicum	3672	50	40	50	86	87	94	74
Clostridium_beijerinckii_NCIMB_8052	5020	61	62	68	114	116	106	94
Clostridium_botulinum_A	3574	47	41	34	82	78	84	71
Clostridium_botulinum_A_ATCC_19397	3552	46	40	34	79	76	34	65
Clostridium_botulinum_A_Hall	3407	44	37	33	76	74	34	63
Clostridium_botulinum_F_Langeland	3635	44	38	36	85	83	39	69
Clostridium_difficile_630	3742	60	53	59	86	85	80	69
Clostridium_kluyveri_DSM_555	3838	32	26	39	63	62	65	49
Clostridium_novyi_NT	2325	28	19	25	47	48	59	43
Clostridium_perfringens	2660	50	36	33	73	77	75	61
Clostridium_perfringens_ATCC_13124	2876	49	34	34	68	71	1	58
Clostridium_perfringens_SM101	2558	31	22	21	55	57	15	48
Clostridium_phytofermentans_ISDg	3902	111	108	110	172	171	180	160
Clostridium_tetani_E88	2373	26	24	28	60	58	68	55
Clostridium_thermocellum_ATCC_27405	3191	44	46	57	94	91	83	69
Corynebacterium_diphtheriae	2272	48	40	62	53	49	49	40
Corynebacterium_efficiens_YS-314	2950	45	38	72	50	50	40	42
Corynebacterium_glutamicum_ATCC_13032_Bielefeld	3057	90	74	85	96	97	89	90
Corynebacterium_glutamicum_ATCC_13032_Kitasato	2993	82	67	79	86	88	83	89
Corynebacterium_glutamicum_R	3052	82	66	78	89	89	84	85
Corynebacterium_jeikeium_K411	2104	36	38	63	52	52	39	47
Dehalococcoides_BAV1	1371	17	14	34	25	25	18	20
Dehalococcoides_CBDB1	1458	18	13	38	26	26	21	23
Dehalococcoides_ethenogenes_195	1580	20	17	30	26	27	29	27
Deinococcus_geothermalis_DSM_11300	2335	37	39	54	51	37	41	42
Deinococcus_radiodurans	2997	46	36	65	60	46	50	42
Desulfitobacterium_hafniense_Y51	5060	120	121	189	161	159	170	153
Desulfotomaculum_reducens_MI-1	3276	41	38	52	67	62	61	52
Enterococcus_faecalis_V583	3113	67	63	72	88	83	81	76
Frankia_alni_ACN14a	6711	38	43	150	65	62	57	48
Frankia_CcI3	4499	33	34	87	46	48	46	39
Geobacillus_kaustophilus_HTA426	3498	67	61	80	80	73	75	65
Geobacillus_thermodenitrificans_NG80-2	3392	63	60	83	80	79	79	72
Kineococcus_radiotolerans_SRS30216	4480	63	63	124	85	82	72	57
Lactobacillus_acidophilus_NCFM	1864	37	38	40	51	47	43	43
Lactobacillus_brevis_ATCC_367	2185	29	27	36	35	35	28	29
Lactobacillus_casei_ATCC_334	2751	41	44	45	53	51	48	47
Lactobacillus_delbrueckii_bulgaricus	1562	18	19	39	28	29	25	25
Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365	1721	24	20	42	27	28	26	26
Lactobacillus_gasseri_ATCC_33323	1755	22	21	27	30	28	36	30
Lactobacillus_helveticus_DPC_4571	1610	21	19	24	30	28	23	25
Lactobacillus_johnsonii_NCC_533	1821	27	31	31	44	43	40	40
Lactobacillus_plantarum	3009	51	47	55	59	59	52	49
Lactobacillus_reuteri_F275	1900	18	12	24	23	23	18	15
Lactobacillus_sakei_23K	1879	25	26	36	31	31	29	27
Lactobacillus_salivarius_UCC118	1717	16	18	20	22	22	22	20
Lactococcus_lactis	2321	34	29	37	38	37	34	33
Lactococcus_lactis_cremoris_MG1363	2434	39	36	39	38	38	37	35
Lactococcus_lactis_cremoris_SK11	2384	33	31	37	36	36	37	35
Leifsonia_xyli_CTCB0	2030	33	33	56	38	38	30	30
Leuconostoc_mesenteroides_ATCC_8293	1970	0	0	6	4	5	2	1
Listeria_innocua	2968	60	59	66	75	75	70	65
Listeria_monocytogenes	2846	62	59	69	76	76	69	63
Listeria_monocytogenes_4b_F2365	2821	57	50	61	70	69	65	58
Listeria_welshimeri_serovar_6b_SLCC5334	2774	65	66	69	77	80	75	71
Mesoplasma_florum_L1	682	22	3	4	28	27	12	21
Moorella_thermoacetica_ATCC_39073	2465	28	25	51	34	34	28	28
Mycobacterium_avium_104	5120	58	58	132	85	80	81	67
Mycobacterium_avium_paratuberculosis	4350	56	61	129	89	85	75	56
Mycobacterium_bovis	3920	58	56	120	82	75	67	51
Mycobacterium_bovis_BCG_Pasteur_1173P2	3952	60	57	123	83	75	69	53
Mycobacterium_gilvum_PYR-GCK	5241	97	96	148	130	126	110	95
Mycobacterium_JLS	5739	108	105	176	137	129	127	103
Mycobacterium_KMS	5460	100	97	166	127	121	119	101
Mycobacterium_leprae	1605	21	18	36	30	28	24	22
Mycobacterium_MCS	5391	89	89	158	116	112	111	95
Mycobacterium_smegmatis_MC2_155	6716	115	127	189	155	145	155	144
Mycobacterium_tuberculosis_CDC1551	4189	57	49	128	71	66	65	45
Mycobacterium_tuberculosis_F11	3941	60	56	120	82	74	68	50
Mycobacterium_tuberculosis_H37Ra	4034	59	58	117	85	77	68	53
Mycobacterium_tuberculosis_H37Rv	3989	59	58	118	86	78	69	53
Mycobacterium_ulcerans_Agy99	4160	54	58	108	80	75	79	59
Mycobacterium_vanbaalenii_PYR-1	5979	115	122	177	154	145	135	111
Mycoplasma_agalactiae_PG2	742	7	4	4	40	42	27	66
Mycoplasma_capricolum_ATCC_27343	812	43	25	5	64	64	44	55
Mycoplasma_gallisepticum	726	19	3	2	62	61	43	49
Mycoplasma_genitalium	484	14	10	9	21	21	18	19
Mycoplasma_hyopneumoniae_232	691	14	4	5	35	34	34	27
Mycoplasma_hyopneumoniae_7448	663	12	3	6	26	26	28	22
Mycoplasma_hyopneumoniae_J	665	13	2	5	28	28	26	21
Mycoplasma_mobile_163K	633	20	16	2	21	22	10	23
Mycoplasma_mycoides	1016	42	20	7	57	57	39	47
Mycoplasma_penetrans	1037	68	9	10	68	69	51	68
Mycoplasma_pneumoniae	689	40	29	36	49	48	44	45
Mycoplasma_pulmonis	782	25	5	3	54	54	44	46
Mycoplasma_synoviae_53	672	9	5	3	26	27	18	27
Nocardia_farcinica_IFM10152	5683	79	90	149	126	124	97	92
Nocardioides_JS614	4645	87	92	147	125	121	100	96
Oceanobacillus_iheyensis	3500	110	108	97	133	125	131	125
Oenococcus_oeni_PSU-1	1691	3	0	3	5	5	7	0
Onion_yellows_phytoplasma	754	3	0	5	3	3	2	0
Pediococcus_pentosaceus_ATCC_25745	1755	25	21	22	25	26	23	22
Pelotomaculum_thermopropionicum_SI	2920	28	27	57	50	53	42	39
Propionibacterium_acnes_KPA171202	2297	47	46	78	54	54	56	49
Renibacterium_salmoninarum_ATCC_33209	3507	38	36	69	52	50	48	43
Rhodococcus_RHA1	7211	108	120	189	159	155	152	142
Rubrobacter_xylanophilus_DSM_9941	3140	28	35	65	58	53	44	51
Saccharopolyspora_erythraea_NRRL_2338	7197	64	86	159	120	108	90	76
Salinispora_tropica_CNB-440	4536	43	59	88	70	71	65	61
Solibacter_usitatus_Ellin6076	7826	85	93	167	186	135	141	89
Staphylococcus_aureus_aureus_MRSA252	2656	53	52	68	63	60	61	57
Staphylococcus_aureus_aureus_MSSA476	2579	54	56	70	67	65	68	62
Staphylococcus_aureus_COL	2615	51	52	70	68	65	65	61
Staphylococcus_aureus_JH1	2747	55	58	68	71	69	70	65
Staphylococcus_aureus_JH9	2697	55	58	68	71	69	70	65
Staphylococcus_aureus_Mu50	2697	60	57	70	72	70	72	66
Staphylococcus_aureus_MW2	2632	54	54	68	65	63	66	60
Staphylococcus_aureus_N315	2588	58	55	67	70	68	70	64
Staphylococcus_aureus_NCTC_8325	2892	45	42	63	57	53	55	50
Staphylococcus_aureus_Newman	2614	55	55	66	72	70	69	64
Staphylococcus_aureus_RF122	2515	50	49	59	59	59	59	56
Staphylococcus_aureus_subsp._aureus_Mu3	2698	60	57	70	72	70	72	66
Staphylococcus_aureus_USA300	2560	52	54	66	68	65	68	63
Staphylococcus_epidermidis_ATCC_12228	2419	45	42	51	52	50	52	48
Staphylococcus_epidermidis_RP62A	2494	48	49	60	57	53	58	53
Staphylococcus_haemolyticus	2676	42	47	58	55	53	56	51
Staphylococcus_saprophyticus	2446	37	35	52	44	46	46	42
Streptococcus_agalactiae_2603	2124	32	36	29	50	52	45	39
Streptococcus_agalactiae_A909	1996	29	31	30	45	47	40	34
Streptococcus_agalactiae_NEM316	2094	33	36	30	49	48	42	36
Streptococcus_gordonii_str._Challis_substr._CH1	2051	54	52	56	70	67	63	58
Streptococcus_mutans	1960	27	27	24	37	36	29	25
Streptococcus_pneumoniae_D39	1914	36	35	36	47	43	43	37
Streptococcus_pneumoniae_R6	2043	32	33	38	42	39	39	35
Streptococcus_pneumoniae_TIGR4	2094	37	34	37	45	40	40	34
Streptococcus_pyogenes_M1_GAS	1697	29	25	28	35	31	30	31
Streptococcus_pyogenes_Manfredo	1745	31	30	33	42	38	32	31
Streptococcus_pyogenes_MGAS10270	1987	35	29	30	37	34	30	34
Streptococcus_pyogenes_MGAS10394	1886	30	27	32	35	32	28	30
Streptococcus_pyogenes_MGAS10750	1979	36	29	31	39	37	31	32
Streptococcus_pyogenes_MGAS2096	1898	35	29	27	39	34	29	30
Streptococcus_pyogenes_MGAS315	1865	27	27	30	40	37	30	31
Streptococcus_pyogenes_MGAS5005	1865	34	27	31	36	33	31	32
Streptococcus_pyogenes_MGAS6180	1894	36	30	31	38	35	31	34
Streptococcus_pyogenes_MGAS8232	1845	30	29	29	42	37	31	30
Streptococcus_pyogenes_MGAS9429	1877	34	30	26	38	34	29	31
Streptococcus_pyogenes_SSI-1	1861	25	25	28	36	33	25	26
Streptococcus_sanguinis_SK36	2270	47	51	52	65	61	59	55
Streptococcus_suis_05ZYH33	2186	32	30	39	37	38	36	32
Streptococcus_suis_98HAH33	2189	28	28	37	36	37	31	29
Streptococcus_thermophilus_CNRZ1066	1915	23	26	22	34	31	25	25
Streptococcus_thermophilus_LMD-9	1710	29	30	22	37	33	29	29
Streptococcus_thermophilus_LMG_18311	1889	25	27	23	35	32	28	28
Streptomyces_avermitilis	7577	100	135	206	170	165	140	142
Streptomyces_coelicolor	7769	123	154	222	191	188	177	160
Symbiobacterium_thermophilum_IAM14863	3337	60	60	108	66	63	58	56
Syntrophomonas_wolfei_Goettingen	2504	34	30	54	47	50	60	41
Thermoanaerobacter_tengcongensis	2588	31	24	42	47	43	50	44
Thermobifida_fusca_YX	3110	34	40	72	74	70	55	53
Tropheryma_whipplei_TW08_27	783	8	8	14	11	11	11	9
Tropheryma_whipplei_Twist	808	9	7	15	16	16	10	9
Ureaplasma_urealyticum	614	20	15	9	38	38	25	43
TOTAL PREDICTED SEQUENCES		9044	8801	11902	12634	12097	11000	10490