Organism: Lactobacillus_acidophilus_NCFM
Prediction method: DOLOP consensus pattern
Number of proteins predicted : 37

>gi|58336367|ref|YP_192952.1| putative alkylphosphonate ABC transporter [Lactobacillus acidophilus NCFM]  [1-21]
MKFKKVLVGAMAILATVSLAACSNNKKSTSASSEPKELNVEFVPSTQANKMEAKAKPLGT
LLQKQLHIPVHVTVSTDYSGLVEAMSSKKVDVGFMPPYSYILAHKRGIADVLLQAERYGY
DEPSGKMNHTLMHKYRGMIVVKKGSKIKSWKDLKGKKIAIGDPSSSSGYVYPVAELYKKG
LNVTKDCKLVNVKGDDQEVLSVLNGDVDAAFVFSDARNIAAKDDKKAMTDVVPIYFTKWI
PNDTIAVRKDMPKKFRVKLAKAFKNIAKSKKGKQIIESIYNHYGYVDAKDSDFDGLRQYQ
KVVNKATGGNSNN
>gi|58336393|ref|YP_192978.1| putative permease [Lactobacillus acidophilus NCFM]  [1-25]
MSTAWQKFKNNVLLRRFVVFLLIVACLYEMRAMMNTILLTFIFTYVIVHLIHLVQRYIPK
MPTGVIVVVTYLIILALLYFVITVYLPMLIVQISKMVKSVMAFYEKNESSRLVSYITRYI
SKGELVTQAKHAMTFAFHTATNIGTLTIATFMSLILSFFYTIELNKMKEFSSLFVKSGYL
KWLFEDIRYFDKKFTNTFGVVLEAQFFIALCNTALTVIGLVIMKMPQIVALGLMVFLLSL
VPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAVEAYVLNPKFMASKTELPIFYT
FLVLLVAEHFWGTWGLIVGVPIFTFFLDVLGIKSSKKSDKKKAEQK
>gi|58336525|ref|YP_193110.1| DNA polymerase [Lactobacillus acidophilus NCFM]  [1-20]
MKLKKAIIGISFAAVFLLSGCSSQQKKADPVLNKDQVVQKARKSFKSGQVIQSVTLATDT
SSQSAIANTTFGGESTVYHITNQTTSKGKTSSSEEWVNLNNVYINGRDTWYKADLEKLTG
HSYAELTDAIMNNHFILNPSDKLVKAYKMKRNKQTYTLNAKITDKALMKKAASPIFNTVA
QSANQAKTFKQIQKYGKYKDMTVKAVVKNNRLSTFNIFVNMKLGKLMTVKVGQSYGNFGS
HDFLKVPTSATNAKPLPATNNKKK
>gi|58336526|ref|YP_193111.1| hypothetical protein LBA0184 [Lactobacillus acidophilus NCFM]  [1-22]
MKNKKKYFVVVLFSLLLVALTGCSSNSNSKKENTLPSAKTILTNAQKTKFQSMHATWSEN
SKNEVVQKAEAQYVKDPTVIFANVSTNSNHYQMWIEGKNNYIQMKGTNSNHWFKTKLSKA
SSYSTLTDSLGTILTPFIGTSKLFKVQQTGNSYALKYNGNSKQIWNAIISDSAVTSLIGI
DLDDVKPINNNIQIDVDKNYSVNDVKIASTYKDDGKQKTFTMKVDQIDQIKNLTVPASVK
KSAVDLGTINKNN
>gi|58336538|ref|YP_193123.1| oligopeptide binding protein [Lactobacillus acidophilus NCFM]  [1-22]
MKLKKVFAAGATILVAGSALAACSSNNSSSSSGSAKKSISWMDAAEIPTMDISKATDATS
FNQLNNVEEGLYRLGKNSKVENALATNTKVSKDGKTWTFTLRDSKWSNGDKLTAKDFVYS
WRRTVDPKTASQYAYLFEGIHNATQISAGKAPVNSLGIKAEGDNKLVVTLDKRIPYFKLL
MGFPLFFPQNQKVVEANGSKYGTSSKTTAFNGPFVQKGWTGSNLSWKLQKNKNYWDKKNV
KLDTINYSVQKTPSTAYNLYQSNKLDATILDAQQTKNLKHNAGYTLRDSAATFYMQFNQK
QKIFKNENLRKAISMSINRKALANALGGSNTPATSLTAKGVVNHDGKDWSSVVGDKKDTS
YNPTEAKKLYKQALKELGVKSVSFSILSDDTDSGQKTTETLQSQLEENLKGIKVSVSNVP
FKTRLSRSTSGNFDTVVSAWSADFADPISFVDLFTSKNANNNGKWSNSQYDKLIADSKTT
PDTTKRWDDLEKAEKILLNEQGISPLYYRTEAWLVRPDIKGIVYNGAGVNYNFKNAYVSG
N
>gi|58336539|ref|YP_193124.1| peptide binding protein [Lactobacillus acidophilus NCFM]  [1-22]
MNKFRKMMAAGVVTLAAGTLAACSNSSNSSSGNKKTLNWMDKTEIEGMDLSKVTDATSFT
QLNNTMEGLYRLGKNSKIEPGLATKTSTSKDGKTWTFTLRKNDKWSNGDPVTAKDFVYSW
RRTVDPSTGSQYSYLFSGVKNADDIVAGKKKPTALGIKAVGDDKLVVTLDKRIPYFKLLM
GFPLFFPQNQKTVEKYGKSYGTSSKTTVYNGPFVQKGWTGSNLSWKLEKNKNYWDKKNVK
LDTINYSVQKTPSTDYNLYQSGKLDAALLGPQASKELKNQKGYTLRKTASTIYLEMNQKK
KPFSNENFRKAVSLSVNRKELANSVGGAAEPADTLSPENMTEVNGKDYTDLVRGDATKKF
NTYNRKEAQAYWKKAQKELGKSSVSLTILTYDDDASKKGGEYLQSAIESALKGVNARVQS
IPKKTALDHAGNGDYDVFLMGWTADFSDPISFLDLNTTNNSQNWEKYSDSTYDKLIAESK
VTPSETTRWNSLVKAEQRIIDTQGVTPLYHPEEAWMVRPTVKGVIYNGAGAPYNFKNAYV
EN
>gi|58336831|ref|YP_193416.1| ABC transporter sugar-binding protein [Lactobacillus acidophilus NCFM]  [1-21]
MKKWKLGVAAIATVAALSLTGCSNNSQSGSSNNKNVTMWVHFSNTDPEGKALQKNINDFN
KENKHGYKAKVQYIPRSGSGGGYEDKINAALNSGSLPDVLTLDAPNTAAYAHSKIIQPID
KYITNKDDILPTIIKQGTYKGKLYAAGYSESSIGFYYNKKMFKEAGIKDSEIATLQHPWT
WTQFKDICKRLKNHFHEPAINMNLNDHSEMALYSLAPFVWSAGGSITNPAGTKAVGYFNS
KQTTSAFQLIQDMVKDGYTTISPKDKGFETGKYAMMMTGTWEVQTLQNQYKNLQWGVMPY
PVSPATHKEVSPTGSWQYAMSSAAKNKKAAGALINFLMSKKCMYRSDMANTVLPARKSVS
KMMMPKVNEQMRFFIKQNQTTGHARPVLVNYPQVTRTFADTVQNVTLYKKNPNVQKVMNE
QAKVIQKYLEK
>gi|58336857|ref|YP_193442.1| putative protein involved in sex pheromone biosynthesis [Lactobacillus acidophilus NCFM]  [1-19]
MKKYLQIMALAGIAITLTGCGRLKDSSLANNATTTSTTKKKSYQTTNTGNSGYSVLLKNG
RYVVSPIAGLTATDNDNSVDTRELERGLIQISKNQFSTNQYVFQEGQQLDTSTVTDWLTR
KSKTNPQGLNPVNNGKTGTDTRNPIYLEEIVEQDYLTGSGSKYQLGGMSLGLAMNSVDYY
QKKRDGAEFQTDISKATQRAQGEKIANEIVARLRKRKSLKNIPITIGLFSKTGKDSLVGG
TYFAYGTAAANSSKITKWKSMSEKMQVLPTTGNEKAINSDDASHFNDFKTAIQNYFPNIS
GVTATLRYDNGKLAQENISITTQFYGYEQIQSFTRLTLSTAKKYLPNNIPIEIKIGSVDD
VQALIAKETGDSDYQVHVYGGE
>gi|58336899|ref|YP_193484.1| glutamine ABC transporter [Lactobacillus acidophilus NCFM]  [1-21]
MRKKYFLSTFLIALLAITLSACGQNKNQSIYQTVKETKSITWGVKADTPLFGSMSIKDGK
VRGFEIDLAEALTHKILGKQAKANFVTTTANTKIQLLKNRNVDAVIAAMTITPERKKQVE
FSKPYFPAGQSIMVAKNSKINNVKDLNNKRVLIVKGTTSADAVRKFAPKAEILQFDDYGQ
AFAALKADQGDAFVTDNGILAGILRDNSGYKIAGGTFTNQPYGIAVNKGQNEMMEHINLA
LTQLEKDGTYNRLVEKWFGNIPGFNVKEIEKY
>gi|58336906|ref|YP_193491.1| glutamine-binding protein precursor [Lactobacillus acidophilus NCFM]  [1-22]
MKKLRKFLFLPLLMLLALTLSACGNKSSQNVYRKVKADKQIVWGVRADTRLFGLTNVKTG
KIEGFEIDLARALTKQMLGKNAKADFVTTTANTRIPLLKNGNIDAVLATMTITPERAKQV
TFSKPYFPAGSSLLVPNDSKIKSVKDLNNKTVLAVKGTTAVDDVHKSAPKARVLQFDDYG
QAMSALKANQGVALTTDNGLLAGIAQENPGYKLVGGVYSDAPYGIAVNKGQKDMADHIDK
ALDELEANGTYNRLIRKWFAGIPGFSLKGVLK
>gi|58336911|ref|YP_193496.1| glycerol-3-phosphate ABC transporter [Lactobacillus acidophilus NCFM]  [1-22]
MKFYKKLALVSTATIGLISLSACSNNSNNSSSTKIPTKITKKTTINFWYSLTGTSQNALK
KLTKDFEKKNPNINIKLQSQGGNYSDLQAKLVSGLQSPKDLPTITQAYPGWLYNAAKNNM
LVNLTPYVNNKTIGWGSYKDSGIKQALWDGAKINGTQYGVPFNKSVEVLFYNKTLLDKYG
VKVPTNMSQLASASAEIYRKSNHKVRGAGFDALNNYYMMQMKETYGKDFNKNVNFAAKDS
VKAINYYAEGVKAGYFMQAGTQKYMSTPFNNGQVAMFIGSTANEAYLKQGLKKGYVYGVA
ARPSSMNVQQGTDIYMFKKASAMQKAAAFKYLKFLTSKSSQLYWAKQTGYMPVNTAALND
SAYQKAKNSKIPAILSKTSKNLYFLPVTKNSITAYDQVNVNMQNILAKASKGQNWTSDIK
SGKAKLDASWKQ
>gi|58337193|ref|YP_193778.1| hypothetical protein LBA0888 [Lactobacillus acidophilus NCFM]  [1-19]
MKKIWTGIAIVLVTNLLAGCSQIHFGKDAITIGDEQKNLLKKNKKKKVVHPKIEKKKTKV
KSVWNKTKYQELQKIVNNWGRVKKQHYHFYDGVHSLKIKAGVTYPKAFDQNGFVLNKEKI
KIGWSPEGKNTYQYNVVAIANDNFETWHNTYLFCLRKNKPIILLDQSKRNKLVLVKKVNN
PTLNKAFKQILEDKQKSM
>gi|58337262|ref|YP_193847.1| hypothetical protein LBA0965 [Lactobacillus acidophilus NCFM]  [1-21]
MDKLKTGVNSLTNTIAYALIGCIAFVVMKFSFPIIPGVGFLKFDFSDVIITIGMFIFGAI
PGVIMALIRMILSLIFEGFALPSVIGEIAAFLATMSFSLPFYYLSRNITQENRKTKVGRL
KPILGLIIGILAMTCILALANAFILTPAYAVTAVPNLPTINSYGALYHFTEKVYLGQLLH
LPSMSTYIFSIIVPFNLLKGIINAVAIYLIFEATIKTIKPFVRKRFKLN
>gi|58337395|ref|YP_193980.1| putative flavodoxin [Lactobacillus acidophilus NCFM]  [1-22]
MKLWKKALLTIGLVFSVISLAACANSNSSSSNNSQSNGKAKTTKVGKASKSNTLIVYFSL
TGTTQDAAKYIQKQTGTKMIRLQPEKAYGDYDSAARRGDRERRNNIHPTLATNIPNFSKY
KTVFIGYPTWWQRPPMLIHTLFDKYNFQGKTVVPFTTSMSTPIGPSQAVIKQLAQKDGAT
FKNGIRYDNNNKQVRSWLKGLGY
>gi|58337396|ref|YP_193981.1| hypothetical protein LBA1106 [Lactobacillus acidophilus NCFM]  [1-21]
MKKKKVSILMTLLATTSLLAACGQVASNSNENGQSRAVVRKSTDSQSEIIKYTTTYNGKK
YTKQAVVYLPKNYNAKEKHNILYFKYFVPMAGDSWTVTSDGGSAAPRRTAQVLANAAKKN
SNLSFKIFAGVGSGDGTSESMEPQIRAMWNLPQFNRSNLEYYTQPGGNHDAPTMSRIINH
YGKELFK
>gi|58337427|ref|YP_194012.1| diaphanous-like protein [Lactobacillus acidophilus NCFM]  [1-22]
MKLLKKLTLILSLSAVMITLSSCSNIANWELSMRSKIGALPLTVSTYDSNGQKIDQIKAK
SVDIHTDKKMSQKDDKGNEGSSVIDVDYGNNRMIHVGSTLIAYEGIKNYIDTYNKHTNIN
DQNHSIPLLNTMYQNFKNAWSGDSKVVMIRSQLGMPVAVFTGRNVSIHKSDMKNATQFVI
DGHRLFVYRADYTIYPIASLKN
>gi|58337497|ref|YP_194082.1| pheromone-peptide binding protein [Lactobacillus acidophilus NCFM]  [1-21]
MNLKKGLLLATATLSILVLTACGRDSADQGDQEQTLRLMQDGEIMSLDHSNEANINQWNV
LENSMEGLYRANHKGDPVPALATSVVKPTNHGKRYTYNLRKDAKWSNGDPVTAQDFVVSW
RRSVSPNSRSGYAYIFTGVKNATDITAGKISVNKLGVHALNKHTLQVDLEYPMPYFDRMM
VLPAFFPQSQAALKKFGDKYGTDSSKMYYDGPFKVDGWTGSNLSWSLDRNKNYYDQKAIH
LKHIKMQVVKDANTAHQLFQQGNLDDAQITGTTAQGMQNNKNLMHLHRAGVYYLQLNMRK
NRPFSNVKMRQALNLVLDKKQLARKVLADGSTAADTFVAPTLAEDQSTGVDFAKEMKPEE
THNVTKAQKLWNEGLKEEGKKNINLTYYTDDQTINKNIAQFVQSQVETKLKNANVEVHAV
PAKNSQDNIARGNFDMHLSLWLADYSDPMSDLDILQTNNSQNYGKYSSVNYDKYVKAAKS
KSAEEIDNYWQNMRNAQNQLTKDAAVVPLYNMTESHLVRKNLRGVLWHSVGEVDYTRAYF
D
>gi|58337576|ref|YP_194161.1| oligopeptide ABC trasporter substrate binding protein [Lactobacillus acidophilus NCFM]  [1-22]
MKKAKIFAGITLLSGVALTLAACGNSESNSNESSTAAKFSSAVPKKATKNGGTVKVAVET
DTPFTGIFNDELSTSATDTGVMQYGAESLFATDDQYVFTDKGAATIKINQKAKTATINIK
KNVKWSDGKPVTAKDYEYAYEIIANKATKSQRYTSSLADLVGLEEYHEGKSNTISGIEMP
DGDNGRKVILHFKTMKPGMNTSGNGYIWGTAAPYHYLKDVKFKDLMSSDKIRKKPLFFGA
YKLQKVVRGQSVTWVPNEYYYKGKPKLSKITASVINPNSVAQSIKSNKFDVISVINSQWQ
NVKGTKGVNFIAQVPLSYSYLGFKVGKWDAQRGENVMNPKSKMNNKALRQAIAYGMNVDQ
VYKRYTYGLSFRVPTLIPKQFGDYFDKNVKGYSYNIKKGNEILDKAGFKKKGTYRVQPNG
KPLTIRLAAMTGNSTQEPIVQNYIQQWKKEGLNVKLTGGRLIEFNSFYDKIQNDDPSVDM
FLGAWSLSSEPSPNDLYGEKAPMNYSRFVTKKNNQLLEEMDSQKAFNHTYRVDKFHEWQK
YMDDQAYVVPVANSYSISAVNKKLTGYSLKPSDGCPNWYNVAYAK
>gi|58337577|ref|YP_194162.1| oligopeptide ABC trasporter substrate binding protein [Lactobacillus acidophilus NCFM]  [1-22]
MKKAQLFGSIGLLSGAVLTLAACGQSGQNNNSGAKDAQKFPASTPKKATKQGGTVSIALE
TDTPFTGIFSDELSTSAIDSSVASPGEESLFDTDDHYRINDKGAATMKLDRKAKTVTITV
KKGVKWSDGQQVNAKDLEYPYEILANKKTQAQRYDSTLEEIEGMKEYHEGKAKAISGIEM
PDGEKGRTIVIHYKELKPGMYFSGNGYFWESAAPYHYLKDVPFDKLQSSDQIRKKPMYFG
PFKLQKLVRGQSVTWVPNKYYWRGKPKLDKITLQVVSPNSASQSIKSHKFDIAGVINSQW
DQVKNTKGVNWVAQVPLSYSYLGFKMGKWDAKTGKNVMDKDSKVANKSLRQAIGYAMNVD
AVNKRYTHGLSFKVNTLIPKGFGAYHDSSIKGYNYNLKKANQLLDKAGYKKKGKWRVQPN
GKPLVLHFATMSGSPNAEAIAQNYLQQWHKIGLNVKLTGGRLMEFNSFYDKVQNDSKDID
FFQAGWSLASEPSQASMYGETSPMNYERFATAENNRLLKEMDSQKSFNTDYRVKVFHQWQ
KYMFDQAFVIPTSNSYSINAVNNKITGYSTKPSQNNNGHQLWYQVGYVK
>gi|58337623|ref|YP_194208.1| putative alpha-beta superfamily hydrolase [Lactobacillus acidophilus NCFM]  [1-19]
MKKRFLYIFLVSLAMTLTGCMMNNSASESKDKPIKVEQKNKKIKQIKAKYQVVEHDWNVY
KDGVNIYGRIYVPKDLAGKKKAVILSHGLAGNYHDLVDYAKNLAGQGYVAYVFDYPGGAK
NGRSTGVEQLNMSIFTEEQNLKTVLEAIKDRTDVNPKQVSLLGESQGGAVSAMLASKYPK
EVKSLILLYPAFSITDYTQAAFKSIKKVPDTLNLFGFTVGKTYFEKLFKYNLLKTATKYN
GPVLILHGSDDIIVPETYSEKANKKFKHSRLHIIKRAGHEFKGEHKKEALGLIDDFLNN
>gi|58337671|ref|YP_194256.1| oligopeptide ABC trasporter substrate binding protein [Lactobacillus acidophilus NCFM]  [1-22]
MKSMKLVSSASLIIGAALSLAACGQNTKSDTKSAEKFPEQTPQKTAKNGGTLNYAIETDT
PFKGIFDSQLSVDQVDSDVMQFGNEALFDTDNSYKITNKGPATFKLNLKKKTATITIKKG
VKWSDGKQVVAKYLEYPYEMTANKATNSLRYSDSLANIVGMKEYHAGKAKTISGITYPDG
ENGRTIVIHFLSMKPGMLQSGNDYFIETAAPYHYLKDVPFSKLVSSDQIRKDPLFFGPYK
VSKVVRGQSVTWVPNKYSWRGTPKLSKMVAQVVSTNSASQAIKSHKFDIADVVNSQWQAV
KDAKNVNFVARIPLAYSYLGFKVGKWENGKNVMDKNSKMNNKSLRQAMAYAMNINQVEKR
YTQGLTFRVPTLIPAQFGDYFDKNTKGFPYNLKKANELLDKAGYKKKGKWRVQPNGKPLH
IHFLAMSGSAVQEPIVQNYIQQWRKIGLHVNLAGGRLIEFNSFYDKLDHDDKGIDMFMAA
WSLSTKPSPRGMYSETNPMNDSRFATKENNKLLDKIDSTKAFNHKYRVAAFHKWQQYMND
EAYIVPLTNSYAIQAVNNKLVNYSLKPAVANSVWYKVGYAK
>gi|58337713|ref|YP_194298.1| ABC transporter sugar binding protein [Lactobacillus acidophilus NCFM]  [1-23]
MKRWLKNITLIGVMMATVISLSACGDKQNSSSGKKVTIEYFNQKKEMAGTLKEIIKDFEK
KNPDIHVKEVDVPTAGTVLKTRILSGDVPDVMNIYPQNIDFQEWAKAGYFEDMTKAPYIK
NIKNNYADSFKVNGKIYSAPLSANVYGFFYNATEFEKLGIKPPKTWDEFKQVVKKIKASG
KSPFAVAGTEPWTLNGYHQLSLATVTGGAKQANKLLRYSAPNGIKVNNPYIQKDFTRLNL
LRENAQNNWRGASYNDAVVSFATGKSLIMPNGSWALPLINQQKPKFKVRTFAFPAAKAGH
EMTVGSGDLALSISSKSKHKKAAEKFVAYMTTPAAMQKYYNVDGSPVAVKGVKQKGVDSQ
LGGLSSLAFTKHDMVWLAQDWTSENDFFNLTASYLMTGNKQQMVNDMNTFFNPMKAAD
>gi|58337723|ref|YP_194308.1| putative surface layer protein [Lactobacillus acidophilus NCFM]  [1-16]
MKFKRLVIGTTFLIAACSGIIVSIQTANHVHAVQNTITIRSRGAKVYNKNGNAIVDARDK
NIVLKEGTVAEYYGEPKYMVWRGHKKASFYNIGGNRYLLGYNVASLNDKGTLSIYRDSYI
YDKTGKRVEKNTVLRKGTAINYVDKLNEKIETEKNLPKFYYYNMAIQRTHEGMLWVKYSV
LSVKYHIINGKEYYKIANNKYIRATNIGYINGRQLFTTEATVTMGKATTKDGKYYARNMN
GKITKTILPYKPGQKVVVDRSFQHSSKSFWRIKGTNYYIFGPDIKKFPIQALRR
>gi|58337762|ref|YP_194347.1| hypothetical protein LBA1497 [Lactobacillus acidophilus NCFM]  [1-19]
MKRKLTVLVAISAALTLAGCSQTSQGNSQPQQSKTSKVSKNNSNTSSSSESGSKNNNQNS
NNNGSTKLSAENMDYKTTASAITVYAAQKYGDSWEIAMNAAKSNNLGVAFRTKSATGISS
DNNGYVYEVSGTGKSSNARYMLKGDGAGKEVTIFIKQRNLGTTTLSEIVKYINDNNDVKT
VQDLAKNAQLDVKLEGNEDSNQASSSESVIPSELQGTWYTADTGNGNIDTLTVSGDKIND
EAGFSMNVKKENTDKADSDSLSGYMKQTTINGIKFYSFTNMGQEPGQGSTYLARHTENGQ
EVIVSANSKGTTNAVYWKSKDLAKQNTNKQFSDLKY
>gi|58337763|ref|YP_194348.1| putative ABC transporter [Lactobacillus acidophilus NCFM]  [1-20]
MSRKIFAMICLITATVGITACSNNSGTENNKQVKQTQKKTSPKLRVKELTNPEQASALTT
YAAIKYKGRWQEVYQKADKNKLYVSLKSRVGFKHFTKGKGYIYEVSGNGKENATFYTFNK
QTVYFYSRQKRVGSTSLDEIISFLNKEKKVQNVKSLAKKTKYAAAITSDKYGIKGDNGLV
NVPKNLIGTWYNRRGKKLVITAHTVAGKEIHSIASGGLVTDYFVQTKDWSRARIENINGV
DCYHVQEINAQDFGILYSMQKKGKNDAIATYSVDTGSYTGSYWKSKKIAQENVTAKFKSL
K
>gi|58337788|ref|YP_194373.1| putative family protein [Lactobacillus acidophilus NCFM]  [1-23]
MRKIKKYMGVVALVLVATLVLSACGATNNPNVTPHSGIYGWVYQWLGRPLQNIMIQTAHM
IGGENGAGWGIVIITFVVRLILMPLMLVQQNKSVRQQEKMARLQPQMKLIQNAMKHKGIT
PDQQMTLSGWQRELYSKNQVSLTGGIGCLPLLIQLPIMWGIYQAVFYSQELAHSTFFGIS
LSQKSVVLAIIATVFTVIQGYISTIGIPEEQKKTMQSMMLFNPIMTLFFSLSFSGALALY
WAAGNFVMIIQQLIVTFILTPKVKQHVADELKEKPVEVVVTKEKVASLFDTDSTSGSKNN
EAKKELHQDLRNRNKGKQQRRK
>gi|58337864|ref|YP_194449.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus NCFM]  [1-22]
MVFSKKIKRTLISLVALVSLVSCGAVFTTPVSADTSSSYRNNEVNLDVKSAIAIDSNSGQ
ILYAKNADKTLPIASMTKLITVYLTLNAIKNKKLSWNQKVKPTASIVKVANNAEYSNVPL
KMGHSYTIRQLYQATLIESANGAAMLLGQTIAGSQKKFIDQMRAQVKKWGIEDAEIYTAC
GLPNGNVGKDAYPGVNKNAENTMSAKDMAIVGQHLLKEYPEILDTTKLAHLDFKDGNKTT
KMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFIGTVEHNGARLITVVMGARHQDGT
DPSRFIQTKKLMSFIFNKYRPVTMTAGSQINGAKSIKVTDGKDATTNIGLKNKTTIWDPA
DGKTLTASLNKKTIDAPLEKNQTVGNYQLKSGSEKIVSLDNPNGMNVKAKALSANGKVNF
FVRIWRWLFGGR
>gi|58337923|ref|YP_194508.1| oligopeptide ABC transporter substrate binding protein [Lactobacillus acidophilus NCFM]  [1-22]
MSKFKGVMAGIITVSMGLLLAACGNNNSAKPAADNALNLSTTAPLDTIDISKSTGFGQTG
NVFESFYRLGKNGKPTAGLAKSGTVSKDGKVWTFKLRDAKWSNGDPITAQDFVYSWRRSL
NPKTASPYSYLFSGVKNADAVAQGKMKPSAVGISAPNKNTVVVKLDKPIAYFKVLMAYPL
FGPQNEKVVNKYGKKFATKAQYQVYSGPFKIKGWNGTNDTWSFVKNNKYWDKKVVKLDKV
NYQVVKSNNTGYQMYQQDKLDLTPLSSEQVKNLRTNKDFTQYPYSLVRFLLYNFKDKNAT
NRKALNNKNIRLALSLSIDRDIVTKKVLGNGSTLPTGFVATDLAKSPTNGTDFAKDQAVK
NTVDYNPTLAKKYWKKGLKEIGEKNLTFNVLSSNDESDSDQLTQYLQSQWTKDLKGLKVN
ITNIPDKSTTSRAQEGDFDIYLSHWGGDFNDPMTFMQIPMTGTSYNYGKWSNAEYDNLVK
KAGNQDANDPATRWNDLVSAAKIVNRNQAITPIYQQTTAYLQKPRVHGIIHNTAGTQWSY
KYAYVK
>gi|58337930|ref|YP_194515.1| amino acid ABC transporter [Lactobacillus acidophilus NCFM]  [1-19]
MKKKWIFVLLATLMLVLTGCESVQKRANTQNTWNKIAQKKQVVIGLDDSFVPMGFEKKNG
QLTGYDVDLAKEVFKLYGINVSFQTIDWSMNVTELRNGTIDLLWNGYSITKQREKKVAFS
RPYLRNRQVLVVKKNSGISSFSQMKKYELGMQTGSTAEQWYETKQNILHAKKTVLYDTIS
NSFLDLNAGRIQGILLDEVYANYYIAHMAKSKNYKVIQNDAVPMDLFAVGMRKGDKTLRK
KVNQGLEKLQKNGKLKQLNEKWFNKNSSYLGK
>gi|58337955|ref|YP_194540.1| hypothetical protein LBA1697 [Lactobacillus acidophilus NCFM]  [1-20]
MKKRIIGFMLTGMAILALTGCQNNKKNSSVAKQNGVGQVKKTNHSNTDNGGKFGHNASVS
TALWDTSKQDKLDDFFDDWADSMNQEYDKYDGDGQITTAAGEKFPQDFDRVYINNQKVSI
AYNPDGKGNADYNVVAIYNHDSDKAPLEGHITYFFSFHDGKPVVLVDETTNGDKVMVKET
ANQDLINGFNAIAGGQTASMPDKDSDDSNSSADDSSSEDPKLIGVFIGLLKDGDWFKDNL
KDGTMYFSDSAGHGKTNGYDCITTGGSPASYYWFKQEGNQVIVKYSDPDHTVSDGVYKTE
RYTVDRLKSDYYVNSGQKAEVNGYVNKLKSLDDLGD
>gi|58338026|ref|YP_194611.1| ABC transporter, periplasmatic component [Lactobacillus acidophilus NCFM]  [1-27]
MQNWKTRITKLSFLIGIVGTIMLFVSACSNNKQSSTNDGKISIVTSTNVYADIAKNIVGK
YGSAKAIIKNSATDPHDFEPTTQDAKELSSTNIIVANGLGYDSWMNKLASSVDKKPVLVG
EELMKLKKGANPHIWYSLSMPTEYVDYLVKRLSKIDSKHKAYFEANGKKYLAKINQVKAL
AKNSKKTDKMVFVSEPVFDYALAEAGYKIGDKDFEKAVENNTDPSPKTINRMTNDIKNKK
IAFFVNNTQSSSSTVKTFVKLAKQNNIPVLNVRETIPNHTTYLNWMKENYQNLANISK
>gi|58338112|ref|YP_194697.1| maltose ABC transporter permease protein [Lactobacillus acidophilus NCFM]  [1-22]
MKFWKKMALGSTAVLAAMSLAACSNGSSNSSSSSNTSNKKANLTLWVDTEQVPYYKQIAK
DFTKKNKNIKVRVVQSPNGSANAKTDVGKDPSKAADVFEVPNDQLGQMAEAGYINPLSPS
ASKDIKANYIDVASKGVTWKGKVYAFSYAQQAQTIYYNKSKLSANDVKDWKTLTSKGVVA
TDFTNAYVMWPVMFSAGTKLYGNNGEDLKGSTFNSQDGINALKWYAAQKKNKGVMQTSNA
LNQLKKGNAQAILDGPWNAANIKKILGKNFAVAKYPKIDVGGKNVQMEAFLGIEGFAVNS
NTKNAKAASDLAAYITNKKSQLIAHKEAGQIPVLKAAVNSSAVKSDPVAEAVIEMAKPGN
SVLQPKLPQMAAFWNGSAPLISGTYDGKIKPSQYKAQLAKLAKTVEKK
>gi|58338175|ref|YP_194760.1| ABC transporter ATPase and permease protein [Lactobacillus acidophilus NCFM]  [1-22]
MLYKYSNHFKFILMIITGIVASCSTIVMAYMVQTLTNIATQKKWNQVSIFLAIVIGGFLI
TFIASLIFNRLKTAAIQETNTYLRTNIFKGMLSTDRDENSNALGFLTNDFKLLETNRFDA
QIEIIMQACTLVLALGYALLVNWLVTILFLVGSFVPMFISNFFQKLIQNASENWTKANGQ
YVNQTKNFLAGSETLRLYNGQESAAEKNQVKVFNLETALRKMNLLNLDTSSWISLIGNLV
TFLIPFLTGVYMVIHEMTTLGSLFAIVQLANSFVNPILTILDDRNELSTTKKIVEKTNKY
LALANNEKVNDNKAVFQDLVLTDVSLNRKGKQLIHNFNLTIKNKTKQAIIGPSGTGKSTL
LQFLMKGKYGEAKGILLNGKTEKAGNFENIFAYASQAPVIFADTLWFNLTLGKNIPQEIV
EQVCFELELTDVIKEKGFDYSLGDNADQLSGGQLARIELARAILSKRPVLLLDEINASLD
KKTSDKIHQYLLNSALTFVEVIHHYDADELEKYNDVIDLK
>gi|58338183|ref|YP_194768.1| hypothetical protein LBA1942 [Lactobacillus acidophilus NCFM]  [1-26]
MLEKSFSINFKKIFLVVLLTMCTLTACSTSNDTDGNASKSVALVTDGNVNDQSFNQSAWR
GLEDYGKEYKLTRGKDGYQYFQVKNQTNLKNGINKALRQKYQTIFAIGNKSKKAILSAAK
SNPQKNFVIIDDTIKGYKNIASVQFKKSEGAYLAGVAAANTTKTGKVGFIGGANNAVINS
FKYGFNQGVKDQAKKMHKKIIVYNQNIGNFTDTSKAKSIAAYMYGKKVDIIFHAAGNAGN
GLFQEAKFINQARPAKKRVWVIGVDTNQSNLGNYFAKGGQEANFVLTSVITGINVATEDI
ATHSYKEAFPGKKTIVYGLKSNVISILPGQIDPNTWKEVQIARTKILTGKIKI
>gi|58338184|ref|YP_194769.1| putative lipoprotein A-antigen precursor [Lactobacillus acidophilus NCFM]  [1-24]
MNSKFKKVFSFGIVLASVGLILTACSGKKSNQTANKDTKHGVALITDANGVDDHSFNQAA
WAGFKAYGKEHDLKRGRGGYQYFQSSSAADYTPNFDQAAKAGYQTIFGVGFQLADAVKEA
AQKNPKKNFVIVDSVVSGQKNVASATFESNQSSYLGGLAAAYTTKTNKVGFIGGAKSAVI
DLFEAGFKQGVADGAKALKKKITVQTQYIGNFTSTDKAKSIAQSMYANKADIIYQAAGNA
GNGVFQEAKDYDQARPASKKVWVIGVDVDQSNLGNYTSKDGKKENLTLTSVLKGLNIATK
SIANDAYKGKFPGGKHLVYNLKDNGVSITKGNLDAKTWAAVQKARTQIIDGKIKVATAPS
K
>gi|58338201|ref|YP_194786.1| oligopeptide ABC transporter substrate binding protein [Lactobacillus acidophilus NCFM]  [1-22]
MRISKKILATSTIIVSALALAACGNQSASQKKKQVLNWSETTQLSTQDPSLATDTTSFQA
LLNTGDGLYRLDKNNKPRLSLAKSVKTSKGGRVYDFVLRKNAKWSNGDPLTAKDFVYSYQ
RTVTPATKSQMAFYLYQIKNAQAINSGKKKPSTLGVTAPSKYHLHIELTRPLSYFKNLLA
WPLFFPQDQKVVQKYGKLYGTQAKYTVSSGPFTLTKWTGNNKTWTLAKNKNYWDAKNVKL
DRVNEQVSESTTTSYNLFQAGKADETGLTGQQVAANKNKAGYHARLSSAIRRLELNQNKV
KAFKDLKIRQAFSYAINRQQLANNILKDGSIPAKGFVPSGMGTNPKTGAQFENDAYVKSG
VSYDLNKAKSLLQQGYKETGIKSIKVTLLASDDDSSKQTAEFLQSQLDRLPNVNISVQNI
PFTQLISRQTTGNYEITIKNWQAVFGDPINFLDVFQKGSSYLNNGWNNNQFNKLLDQSEN
VYGNSPVKRWSRLVAAEKILMRDQGTIPLVQVAHPQLLKTDVKNVSFNPTGVPYDFKNVY
FN
>gi|58338216|ref|YP_194801.1| stage III sporulation protein J [Lactobacillus acidophilus NCFM]  [1-28]
MKDILTKRNVKRLLAVLAVITLAVVLTGCASQGANGQVTPVSHTSGNWWDRWIVYYMSAF
ILWLAKLMGNSYGWAIIVFTIIVRVILLPLNAISIRSTTKMQSIQPQINELRKKYPGRDT
ESRTLLQQETNKLYKEAGVNPYTGCLPVIIQLPVMYALYGAILRTPQLQTGRFLWMDLSK
PDPYYIMPILAMVFTFLSTYISQLSTPKSSQNGMTKVMMYGMSIMVGVMALNFQSAITLY
WVISNLFQAVQTFILQNPIKYRKEQEAKNEAERERKRKLRKTYKRLGRKNK


Letters in green indicate the fragment of the protein where the prediction was succesful.