Photo Thodoris Liakopoulos

MSc student.

2003-2004 : MSc in Bioinformatics, Department of Biology , University of Athens.
1995-2000 : BSc in Biology, Department of Biology , University of Athens.

1. Machine learning approches to model protein sequences (design and implementation).
2. Knowledge discovery and information extraction from large biological datasets.
3. Bioinformatics software integration.

Bagos, P.G., Liakopoulos, Th.D. and Hamodrakas, S.J. (2005) Evaluation of methods for predicting the topology of β-barrel outer membrane proteins and a consensus prediction method. BMC Bioinformatics, 6:7.

Spyropoulos, I.C., Liakopoulos, T.D., Bagos, P.G. and Hamodrakas, S.J. (2004) TMRPres2D: high quality visual representation of transmembrane protein models. Bioinformatics, [Epub ahead of print] [Abstract] [PDF]

Bagos, P.G., Liakopoulos, T.D., Spyropoulos, I.C. and Hamodrakas, S.J. (2004) PRED-TMBB: A web server for predicting the topology of β-barrel outer membrane proteins. Nucleic Acids Res, 32, W400-404. [Abstract] [PDF]

Bagos P.G., Liakopoulos T.D. and Hamodrakas, S.J. (2004) Maximum Likelihood and Conditional Maximum Likelihood learning algorithms for Hidden Markov Models with labeled data. Journal of Computational Methods in Sciences and Engineering [In Press]

Bagos P.G., Liakopoulos T.D., Spyropoulos I.C. and Hamodrakas S.J. (2004) A Hidden Markov Model capable of predicting and discriminating β-barrel outer membrane proteins. BMC Bioinformatics, 2004, 5:29. [Abstract] [PDF]

Pashou, E.E., Litou, Z.I., Liakopoulos, Th.D. and Hamodrakas, S.J. (2004) waveTM: Wavelet-based transmembrane segment prediction. In Silico Biol.4, 0012. [HTML]

Bagos, P.G., Liakopoulos, T.D., Hamodrakas, S.J. (2004) Finding beta-barrel outer membrane proteins with a markov chain model. WSEAS Transactions on Biology and Biomedicine, 2(1), 186-189. [PDF]

Bagos, P.G., Liakopoulos, T.D., Promponas, V.J., Hamodrakas, S.J. (2004) Topology prediction of beta-barrel outer membrane proteins. Proceedings of the Indian National Sciences Academy-Biological Sciences (PINSA-B) [In Press]

Bagos P.G., Liakopoulos Th.D. and Hamodrakas, S.J. (2004) Faster Gradient Descent Training of Hidden Markov Models, Using Individual Learning Rate Adaptation. Proceedings of ICGI 2004 Lecture Notes In Artificial Intelligence Vol. 3264, pp. 40-52. [PDF]

Iliopoulos I., Tsoka S., Andrade M., Enright A.J., Carroll M., Poullet P., Promponas V., Liakopoulos T., Palaios G., Pasquier C., Hamodrakas S., Tamames J., Yagnik A., Tramontano A., Devos D., Blaschke C., Valencia A., Brett D., Martin D., Leroy C., Rigoutsos I., Sander C., Ouzounis C.A, (2003) Evaluation of Annotation Strategies using an Entire Genome Sequence. Bioinformatics, 19 (6), 717-726. [Abstract] [PDF]

Liakopoulos, T. D., Pasquier, C., Hamodrakas, S. J. (2001) A novel tool for the prediction of transmembrane protein topology based on a statistical analysis of the SwissProt database: the OrienTM algorithm, Protein Eng, 14, 387-390. [Abstract] [PDF]